PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004487616.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 228aa    MW: 25193.7 Da    PI: 7.2666
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004487616.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.22.3e-1171118454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++  rE+ RRdr+N++f eL ++l +    + +K +Ka+iL  Av+ + +L
  XP_004487616.1  71 SKACREKLRRDRLNDKFVELGSILEPG---RPPKTDKAAILIDAVRMVTQL 118
                     5678**********************8...89**************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.75467118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.42E-770123No hitNo description
PfamPF000105.2E-971118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-1371140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-1372142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-873124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MVSPENTNWL FDYALMDDIP VPDGSFNFTW PPPDPSNVGV EIDGSLGDSD GIKDPGSKKR  60
GRSDSCAPSS SKACREKLRR DRLNDKFVEL GSILEPGRPP KTDKAAILID AVRMVTQLRG  120
EAQKLKASNS SLQEKIKELK VEKNELRDEK QRLKADKEKL EQQVKSMNTQ PGFLTPPPAI  180
PAAFAPQGQA PSNKLMPFIS YPGVAMWQFV PPATMDISQD HELRPPVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0516910.0BT051691.1 Medicago truncatula clone MTYF5_F6_F7_F81G-G-2 unknown mRNA.
GenBankBT1475120.0BT147512.1 Medicago truncatula clone JCVI-FLMt-9D16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004487616.11e-167PREDICTED: transcription factor ILR3-like
SwissprotQ9FH371e-108ILR3_ARATH; Transcription factor ILR3
TrEMBLB7FHX61e-144B7FHX6_MEDTR; BHLH domain class transcription factor
STRINGGLYMA12G16560.11e-123(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16023486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.12e-98bHLH family protein